PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00637.100
Common NameJCGZ_23368, LOC105647568
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 222aa    MW: 24349.4 Da    PI: 5.8404
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00637.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC102.72.5e-3280147165
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlh 65 
                     ql+sfw++q   ++k++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr  l+
  Jcr4S00637.100  80 QLQSFWANQyqeVDKVADFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLREDLK 147
                     89******9888899*************************************************8665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.41E-1874142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.4E-2495143IPR009072Histone-fold
PfamPF008087.4E-13102141IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDQQGHGQPP AIGVVSSAGQ MPYGTNPYQP NQMSSAQNPG SVSSVGTIHS TGQPAGAQLA  60
QHQLAYQQIQ HQQQQQLQQQ LQSFWANQYQ EVDKVADFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVVFA RACEMFILEL TLREDLKDEV LASISRGAMT VGADALPYGY MPPQHAAQVG  180
TGMIMGKPVM DPPMFAQQSH AYMAQQMWPQ QGSEQQQSPS DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B1e-1795143957NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C1e-1795143957NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089091.11e-142PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_012089092.11e-142PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_012089093.11e-142PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B25e-51NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
SwissprotQ9ZVL34e-51NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A067JU661e-142A0A067JU66_JATCU; Uncharacterized protein
STRINGVIT_14s0128g00250.t014e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-46nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]